Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in dynamic developmental processe

Sushmita Roy1,2, Rupa Sridharan 2,3


Chromatin Module INference on Trees (CMINT) is an algorithm for learning chromatin modules, defined as groups of genomic loci that have similar chromatin states. Chromatin states in turn are defined by a combination of chromatin mark profiles. Here you can download the CMINT code, datasets and results generated for the CMINT paper.

1. Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI 53715, USA
2. Wisconsin Institute for Discovery, 330 N. Orchard Street, Madison, WI 53715, USA
3. Department of Cell and Regenerative Biology, University of Wisconsin-Madison, Madison, WI 53715, USA
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