ATP catabolic process	6
B cell homeostasis	9
BMP signaling pathway	2
DNA biosynthetic process	1
DNA catabolic process	4
DNA conformation change	4
DNA damage checkpoint	2
DNA damage response, signal transduction by p53 class mediator	2
DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest	2
DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis	2
DNA integrity checkpoint	2
DNA metabolic process	4
DNA modification	8
DNA packaging	2
DNA recombination	4
DNA repair	4
DNA replication	4
DNA strand elongation	7
DNA strand elongation involved in DNA replication	7
DNA synthesis involved in DNA repair	1
DNA-dependent DNA replication	7
DNA-dependent DNA replication initiation	7
DNA-dependent transcription, initiation	3
ERBB signaling pathway	2
G-protein coupled receptor signaling pathway	7
G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger	7
G1 phase	2
G1 phase of mitotic cell cycle	2
G1/S transition checkpoint	3
G1/S transition of mitotic cell cycle	2
Golgi vesicle transport	4
I-kappaB kinase/NF-kappaB cascade	2
JNK cascade	2
M phase	4
M phase of meiotic cell cycle	4
M phase of mitotic cell cycle	4
M/G1 transition of mitotic cell cycle	2
MAPK cascade	2
MyD88-dependent toll-like receptor signaling pathway	2
MyD88-independent toll-like receptor signaling pathway	2
Notch receptor processing	2
Notch signaling pathway	2
RNA biosynthetic process	1
RNA metabolic process	1
RNA processing	8
RNA splicing	3
RNA splicing, via transesterification reactions	3
RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	3
Rho protein signal transduction	6
S phase	7
S phase of mitotic cell cycle	7
SMAD protein signal transduction	2
SRP-dependent cotranslational protein targeting to membrane	6
T cell costimulation	5
T cell receptor signaling pathway	5
TRIF-dependent toll-like receptor signaling pathway	2
Toll signaling pathway	2
UTP metabolic process	8
Wnt receptor signaling pathway	1
actin cytoskeleton organization	9
actin filament organization	9
actin filament polymerization	9
actin filament-based movement	9
actin filament-based process	9
actin polymerization or depolymerization	9
actin-mediated cell contraction	9
actin-myosin filament sliding	9
activation of adenylate cyclase activity	7
activation of immune response	5
activation of innate immune response	2
adenylate cyclase-activating G-protein coupled receptor signaling pathway	7
adenylate cyclase-modulating G-protein coupled receptor signaling pathway	7
alcohol metabolic process	8
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	2
anatomical structure development	6
anatomical structure formation involved in morphogenesis	1
anatomical structure homeostasis	7
anatomical structure morphogenesis	6
androgen receptor signaling pathway	2
angiogenesis	1
anterior/posterior pattern specification	2
anti-apoptosis	2
antigen processing and presentation	5
antigen processing and presentation of exogenous antigen	5
antigen processing and presentation of exogenous peptide antigen	5
antigen processing and presentation of exogenous peptide antigen via MHC class I	5
antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent	5
antigen processing and presentation of peptide antigen	5
antigen processing and presentation of peptide antigen via MHC class I	5
antigen processing and presentation of peptide or polysaccharide antigen via MHC class II	5
antigen receptor-mediated signaling pathway	5
apoptotic process	2
appendage development	2
appendage morphogenesis	2
autonomic nervous system development	2
axis elongation	3
axon ensheathment	6
axon guidance	6
axonogenesis	6
base-excision repair	7
biological adhesion	6
biological regulation	1
biosynthetic process	1
blastocyst development	1
blastocyst formation	1
blood coagulation	9
blood vessel development	1
blood vessel endothelial cell migration	1
blood vessel morphogenesis	1
bone development	2
bone morphogenesis	2
brain development	10
branch elongation of an epithelium	3
branching involved in mammary gland duct morphogenesis	2
branching involved in ureteric bud morphogenesis	3
branching morphogenesis of a tube	3
brown fat cell differentiation	9
calcium ion transport	9
camera-type eye development	1
camera-type eye morphogenesis	1
carbohydrate catabolic process	8
carbohydrate derivative biosynthetic process	8
carbohydrate derivative metabolic process	8
carbohydrate homeostasis	2
carbohydrate metabolic process	8
cardiac epithelial to mesenchymal transition	2
cardiovascular system development	2
cartilage development	3
cartilage morphogenesis	9
catabolic process	4
cation transport	9
cell activation	5
cell adhesion	6
cell communication	5
cell cycle	4
cell cycle checkpoint	2
cell cycle phase	4
cell cycle process	4
cell death	2
cell development	6
cell differentiation	3
cell differentiation in spinal cord	10
cell division	6
cell fate commitment	10
cell fate commitment involved in formation of primary germ layer	1
cell fate determination	2
cell fate specification	10
cell junction organization	3
cell migration	6
cell morphogenesis	6
cell morphogenesis involved in differentiation	6
cell morphogenesis involved in neuron differentiation	6
cell motility	6
cell part morphogenesis	6
cell projection morphogenesis	6
cell projection organization	6
cell proliferation	2
cell surface receptor signaling pathway	5
cell-cell junction organization	3
cell-cell signaling involved in cell fate commitment	2
cell-matrix adhesion	6
cell-substrate adhesion	6
cellular aromatic compound metabolic process	8
cellular biosynthetic process	1
cellular carbohydrate metabolic process	8
cellular catabolic process	4
cellular component assembly	9
cellular component assembly at cellular level	9
cellular component biogenesis	9
cellular component biogenesis at cellular level	4
cellular component disassembly	8
cellular component disassembly at cellular level	8
cellular component morphogenesis	6
cellular component movement	6
cellular component organization	4
cellular component organization at cellular level	2
cellular component organization or biogenesis	4
cellular component organization or biogenesis at cellular level	2
cellular developmental process	3
cellular lipid metabolic process	5
cellular localization	9
cellular macromolecular complex assembly	3
cellular macromolecular complex disassembly	8
cellular macromolecular complex subunit organization	5
cellular macromolecule biosynthetic process	1
cellular macromolecule catabolic process	2
cellular macromolecule metabolic process	1
cellular membrane organization	9
cellular metabolic compound salvage	8
cellular metabolic process	1
cellular nitrogen compound biosynthetic process	8
cellular nitrogen compound metabolic process	1
cellular process involved in reproduction	4
cellular protein catabolic process	2
cellular protein complex assembly	9
cellular protein complex disassembly	6
cellular protein metabolic process	5
cellular protein modification process	2
cellular respiration	1
cellular response to abiotic stimulus	2
cellular response to biotic stimulus	5
cellular response to calcium ion	1
cellular response to chemical stimulus	5
cellular response to cytokine stimulus	5
cellular response to endogenous stimulus	2
cellular response to external stimulus	2
cellular response to extracellular stimulus	2
cellular response to fibroblast growth factor stimulus	4
cellular response to growth factor stimulus	2
cellular response to hormone stimulus	2
cellular response to inorganic substance	2
cellular response to insulin stimulus	9
cellular response to interferon-gamma	5
cellular response to ionizing radiation	1
cellular response to lipopolysaccharide	5
cellular response to metal ion	2
cellular response to molecule of bacterial origin	5
cellular response to nutrient levels	2
cellular response to organic substance	5
cellular response to peptide hormone stimulus	9
cellular response to radiation	1
cellular response to stimulus	5
cellular response to stress	4
cellular response to type I interferon	5
central nervous system development	10
central nervous system neuron differentiation	10
cerebellum development	2
chemotaxis	6
cholesterol metabolic process	8
chondrocyte differentiation	6
chordate embryonic development	1
chromatin assembly	2
chromatin assembly or disassembly	2
chromatin disassembly	8
chromatin modification	2
chromatin organization	2
chromatin remodeling	2
chromosome organization	7
chromosome segregation	4
circulatory system development	2
clathrin coat assembly	9
coagulation	9
cochlea development	10
cofactor biosynthetic process	8
cofactor metabolic process	10
columnar/cuboidal epithelial cell differentiation	1
complement activation	10
complement activation, classical pathway	10
connective tissue development	3
cotranslational protein targeting to membrane	6
covalent chromatin modification	2
cytokine-mediated signaling pathway	5
cytoplasmic pattern recognition receptor signaling pathway	2
cytoskeleton organization	9
death	2
defense response	5
defense response to Gram-positive bacterium	5
defense response to bacterium	5
dendrite development	6
development of primary male sexual characteristics	2
development of primary sexual characteristics	2
development of secondary female sexual characteristics	5
developmental growth	3
developmental growth involved in morphogenesis	3
developmental induction	2
developmental process	6
developmental process involved in reproduction	3
digestive system development	3
digestive tract development	3
divalent inorganic cation transport	9
divalent metal ion transport	9
dorsal/ventral pattern formation	2
double-strand break repair	4
double-strand break repair via homologous recombination	4
ear development	10
ear morphogenesis	10
electron transport chain	8
embryo development	1
embryo development ending in birth or egg hatching	1
embryonic appendage morphogenesis	2
embryonic cranial skeleton morphogenesis	2
embryonic digit morphogenesis	2
embryonic forelimb morphogenesis	6
embryonic limb morphogenesis	2
embryonic morphogenesis	2
embryonic organ development	2
embryonic organ morphogenesis	2
embryonic pattern specification	2
embryonic skeletal system development	2
embryonic skeletal system morphogenesis	2
endocardial cushion development	2
endocardial cushion formation	2
endocardial cushion morphogenesis	2
endochondral bone morphogenesis	2
endocrine pancreas development	2
endocrine system development	2
endocytosis	9
endosomal transport	2
endothelial cell migration	1
ensheathment of neurons	6
enzyme linked receptor protein signaling pathway	6
ephrin receptor signaling pathway	6
epidermal cell differentiation	2
epidermal growth factor receptor signaling pathway	2
epidermis development	1
epidermis morphogenesis	2
epithelial cell development	1
epithelial cell differentiation	1
epithelial cell proliferation	3
epithelial to mesenchymal transition	1
epithelial tube morphogenesis	3
epithelium development	3
establishment of localization	9
establishment of localization in cell	9
establishment of protein localization	1
establishment of protein localization in endoplasmic reticulum	6
establishment or maintenance of cell polarity	6
exocytosis	5
extracellular matrix organization	1
extracellular structure organization	1
eye development	1
eye morphogenesis	1
fat cell differentiation	2
female pregnancy	1
fibroblast growth factor receptor signaling pathway	4
forebrain development	10
forebrain generation of neurons	2
forebrain neuron differentiation	2
forelimb morphogenesis	6
formation of primary germ layer	1
gene expression	1
gene silencing	3
gene silencing by RNA	3
generation of neurons	6
generation of precursor metabolites and energy	8
gland development	3
gland morphogenesis	3
glial cell development	3
glial cell differentiation	3
gliogenesis	3
glucose homeostasis	2
glutamate receptor signaling pathway	9
gonad development	2
growth	3
guanosine-containing compound biosynthetic process	8
guanosine-containing compound metabolic process	8
hair cycle	2
hair cycle process	2
hair follicle development	2
head development	2
heart development	2
heart morphogenesis	2
hemopoiesis	9
hemostasis	9
hepaticobiliary system development	3
heterocycle biosynthetic process	8
heterocycle metabolic process	8
hindbrain development	10
histone H4 acetylation	7
histone acetylation	7
histone methylation	2
histone modification	2
immune response	5
immune response-activating cell surface receptor signaling pathway	5
immune response-activating signal transduction	5
immune response-regulating cell surface receptor signaling pathway	5
immune response-regulating signaling pathway	5
immune system development	9
immune system process	5
in utero embryonic development	1
induction of apoptosis by intracellular signals	2
inflammatory response	5
innate immune response	5
innate immune response-activating signal transduction	2
inner ear development	10
inner ear morphogenesis	10
inositol lipid-mediated signaling	3
insulin receptor signaling pathway	4
integrin-mediated signaling pathway	1
interaction with host	1
interferon-gamma-mediated signaling pathway	5
internal peptidyl-lysine acetylation	7
internal protein amino acid acetylation	7
interphase	2
interphase of mitotic cell cycle	2
interspecies interaction between organisms	1
intracellular receptor mediated signaling pathway	2
intracellular steroid hormone receptor signaling pathway	2
ion transport	9
lamellipodium assembly	5
leukocyte activation	9
leukocyte cell-cell adhesion	5
leukocyte degranulation	5
leukocyte migration	5
limb development	2
limb morphogenesis	2
limbic system development	10
lipid metabolic process	2
liver development	3
localization	9
localization of cell	6
locomotion	6
lung alveolus development	9
lung cell differentiation	1
lung development	1
lymphocyte costimulation	5
mRNA metabolic process	3
mRNA processing	8
macromolecular complex assembly	5
macromolecular complex disassembly	8
macromolecular complex subunit organization	5
macromolecule biosynthetic process	1
macromolecule catabolic process	4
macromolecule localization	5
macromolecule metabolic process	1
macromolecule methylation	2
macromolecule modification	2
male gonad development	2
male sex differentiation	2
mammary gland development	6
mammary gland duct morphogenesis	2
mammary gland epithelial cell proliferation	3
mammary gland epithelium development	3
mammary gland morphogenesis	3
meiosis	4
meiosis I	4
meiotic cell cycle	4
membrane budding	9
membrane depolarization	9
membrane organization	9
memory	9
mesenchymal cell development	2
mesenchymal cell differentiation	2
mesenchyme development	1
mesenchyme morphogenesis	2
mesoderm morphogenesis	1
metabolic process	1
metal ion transport	9
metanephros development	1
metencephalon development	2
methylation	2
microtubule cytoskeleton organization	4
microtubule-based process	4
midbrain development	10
middle ear morphogenesis	10
mitosis	4
mitotic cell cycle	2
mitotic cell cycle G1/S transition DNA damage checkpoint	2
mitotic cell cycle G1/S transition checkpoint	3
mitotic cell cycle checkpoint	3
mitotic recombination	7
modification by symbiont of host morphology or physiology	5
modification of morphology or physiology of other organism involved in symbiotic interaction	1
modification-dependent macromolecule catabolic process	2
modification-dependent protein catabolic process	2
modulation by host of symbiont transcription	2
modulation by host of viral transcription	2
modulation of growth of symbiont involved in interaction with host	5
modulation of transcription in other organism involved in symbiotic interaction	2
molting cycle	2
molting cycle process	2
morphogenesis of a branching epithelium	3
morphogenesis of a branching structure	3
morphogenesis of an epithelium	3
morphogenesis of embryonic epithelium	2
motor axon guidance	2
multi-organism process	5
multicellular organismal development	6
multicellular organismal process	1
multicellular organismal signaling	9
muscle contraction	9
muscle filament sliding	9
muscle system process	9
myelination	6
myeloid cell activation involved in immune response	5
myeloid cell differentiation	1
myeloid leukocyte differentiation	1
myeloid leukocyte mediated immunity	5
ncRNA metabolic process	6
ncRNA processing	6
negative regulation of DNA binding	2
negative regulation of ERBB signaling pathway	2
negative regulation of RNA metabolic process	2
negative regulation of Wnt receptor signaling pathway	2
negative regulation of apoptotic process	2
negative regulation of biological process	2
negative regulation of biosynthetic process	2
negative regulation of carbohydrate metabolic process	8
negative regulation of catalytic activity	2
negative regulation of cell communication	2
negative regulation of cell cycle process	7
negative regulation of cell death	2
negative regulation of cell differentiation	2
negative regulation of cell growth	3
negative regulation of cell proliferation	3
negative regulation of cellular biosynthetic process	2
negative regulation of cellular carbohydrate metabolic process	8
negative regulation of cellular macromolecule biosynthetic process	2
negative regulation of cellular metabolic process	2
negative regulation of cellular process	2
negative regulation of cellular protein metabolic process	2
negative regulation of chondrocyte differentiation	2
negative regulation of cytoskeleton organization	4
negative regulation of developmental process	2
negative regulation of endocytosis	5
negative regulation of epidermal growth factor receptor signaling pathway	2
negative regulation of epithelial cell differentiation	2
negative regulation of epithelial cell proliferation	6
negative regulation of gene expression	2
negative regulation of growth	3
negative regulation of growth of symbiont in host	5
negative regulation of growth of symbiont involved in interaction with host	5
negative regulation of hormone secretion	5
negative regulation of interleukin-6 production	5
negative regulation of intracellular protein kinase cascade	2
negative regulation of kinase activity	8
negative regulation of ligase activity	2
negative regulation of lipid biosynthetic process	2
negative regulation of lipid metabolic process	2
negative regulation of macromolecule biosynthetic process	2
negative regulation of macromolecule metabolic process	2
negative regulation of metabolic process	2
negative regulation of mitotic cell cycle	3
negative regulation of molecular function	2
negative regulation of muscle cell differentiation	3
negative regulation of nitrogen compound metabolic process	2
negative regulation of nucleobase-containing compound metabolic process	2
negative regulation of organelle organization	4
negative regulation of phosphate metabolic process	8
negative regulation of phosphorus metabolic process	8
negative regulation of phosphorylation	8
negative regulation of programmed cell death	2
negative regulation of protein kinase activity	8
negative regulation of protein metabolic process	2
negative regulation of protein modification process	2
negative regulation of protein phosphorylation	8
negative regulation of protein ubiquitination	2
negative regulation of response to external stimulus	9
negative regulation of response to stimulus	2
negative regulation of secretion	5
negative regulation of sequence-specific DNA binding transcription factor activity	2
negative regulation of signal transduction	2
negative regulation of signaling	2
negative regulation of steroid biosynthetic process	2
negative regulation of steroid metabolic process	2
negative regulation of transcription from RNA polymerase II promoter	2
negative regulation of transcription regulatory region DNA binding	2
negative regulation of transcription, DNA-dependent	2
negative regulation of transferase activity	8
negative regulation of transport	5
negative regulation of transposition	8
negative regulation of tumor necrosis factor production	1
negative regulation of type I interferon production	2
negative regulation of ubiquitin-protein ligase activity	2
negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	2
nephron epithelium development	10
nephron epithelium morphogenesis	10
nephron morphogenesis	10
nerve growth factor receptor signaling pathway	4
nervous system development	6
neural precursor cell proliferation	6
neurogenesis	6
neuromuscular process	9
neuron development	6
neuron differentiation	6
neuron fate commitment	10
neuron fate specification	10
neuron projection development	6
neuron projection morphogenesis	6
nitrogen compound metabolic process	1
nuclear division	4
nuclear mRNA splicing, via spliceosome	3
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	6
nucleic acid metabolic process	1
nucleic acid phosphodiester bond hydrolysis	4
nucleobase metabolic process	8
nucleobase-containing compound biosynthetic process	8
nucleobase-containing compound metabolic process	1
nucleobase-containing small molecule metabolic process	8
nucleoside biosynthetic process	8
nucleoside diphosphate metabolic process	8
nucleoside metabolic process	8
nucleoside phosphate metabolic process	8
nucleoside triphosphate biosynthetic process	8
nucleoside triphosphate catabolic process	6
nucleoside triphosphate metabolic process	8
nucleosome assembly	2
nucleosome disassembly	8
nucleosome organization	2
nucleotide biosynthetic process	8
nucleotide catabolic process	4
nucleotide metabolic process	8
nucleotide phosphorylation	8
nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway	2
nucleotide-binding oligomerization domain containing signaling pathway	2
nucleotide-excision repair	4
nucleotide-excision repair, DNA gap filling	1
odontogenesis of dentin-containing tooth	2
oligodendrocyte differentiation	10
organ development	3
organ growth	3
organ morphogenesis	2
organ regeneration	2
organelle fission	4
organelle organization	1
organic substance metabolic process	8
ossification	3
osteoblast development	3
osteoblast differentiation	3
osteoclast differentiation	1
oxidation-reduction process	8
palate development	2
pallium development	10
pancreas development	2
pattern recognition receptor signaling pathway	2
pattern specification process	10
patterning of blood vessels	6
peptidyl-amino acid modification	5
peptidyl-lysine acetylation	2
peptidyl-lysine modification	2
peripheral nervous system development	3
phosphate-containing compound metabolic process	5
phosphatidylinositol-mediated signaling	3
phosphorus metabolic process	5
phosphorylation	5
pigment biosynthetic process	8
pigment metabolic process	8
placenta development	9
platelet activation	9
platelet degranulation	5
positive regulation of B cell proliferation	8
positive regulation of BMP signaling pathway	3
positive regulation of DNA repair	1
positive regulation of GTPase activity	9
positive regulation of I-kappaB kinase/NF-kappaB cascade	2
positive regulation of NF-kappaB transcription factor activity	2
positive regulation of RNA metabolic process	1
positive regulation of Ras GTPase activity	9
positive regulation of T cell activation	5
positive regulation of T cell proliferation	5
positive regulation of T-helper 1 type immune response	8
positive regulation of Wnt receptor signaling pathway	2
positive regulation of actin filament polymerization	9
positive regulation of adenylate cyclase activity	7
positive regulation of apoptotic process	2
positive regulation of biological process	3
positive regulation of biosynthetic process	3
positive regulation of cAMP biosynthetic process	7
positive regulation of cAMP metabolic process	7
positive regulation of catalytic activity	2
positive regulation of cell activation	5
positive regulation of cell adhesion	5
positive regulation of cell communication	2
positive regulation of cell cycle arrest	2
positive regulation of cell cycle process	2
positive regulation of cell death	2
positive regulation of cell differentiation	2
positive regulation of cell killing	5
positive regulation of cell migration	6
positive regulation of cell motility	6
positive regulation of cell-substrate adhesion	6
positive regulation of cellular biosynthetic process	3
positive regulation of cellular carbohydrate metabolic process	8
positive regulation of cellular component movement	6
positive regulation of cellular component organization	6
positive regulation of cellular metabolic process	3
positive regulation of cellular process	3
positive regulation of cellular protein metabolic process	5
positive regulation of chemokine production	5
positive regulation of cyclase activity	7
positive regulation of cyclic nucleotide biosynthetic process	7
positive regulation of cyclic nucleotide metabolic process	7
positive regulation of cysteine-type endopeptidase activity	2
positive regulation of cysteine-type endopeptidase activity involved in apoptotic process	2
positive regulation of cytokine biosynthetic process	5
positive regulation of cytokine production	5
positive regulation of cytoskeleton organization	9
positive regulation of defense response	5
positive regulation of developmental process	2
positive regulation of endocytosis	5
positive regulation of endopeptidase activity	2
positive regulation of fibroblast proliferation	2
positive regulation of gene expression	3
positive regulation of glucose import	8
positive regulation of glucose metabolic process	8
positive regulation of glucose transport	8
positive regulation of glycogen metabolic process	8
positive regulation of granulocyte macrophage colony-stimulating factor production	8
positive regulation of histone modification	3
positive regulation of immune effector process	5
positive regulation of immune response	5
positive regulation of immune system process	5
positive regulation of innate immune response	2
positive regulation of interferon-gamma production	5
positive regulation of interleukin-12 production	8
positive regulation of interleukin-2 biosynthetic process	5
positive regulation of interleukin-6 production	5
positive regulation of interleukin-8 production	5
positive regulation of intracellular protein kinase cascade	5
positive regulation of leukocyte activation	5
positive regulation of leukocyte chemotaxis	5
positive regulation of leukocyte mediated cytotoxicity	8
positive regulation of leukocyte migration	5
positive regulation of leukocyte proliferation	9
positive regulation of ligase activity	2
positive regulation of lipid metabolic process	9
positive regulation of locomotion	6
positive regulation of lyase activity	7
positive regulation of lymphocyte activation	5
positive regulation of lymphocyte proliferation	9
positive regulation of macromolecule biosynthetic process	3
positive regulation of macromolecule metabolic process	3
positive regulation of memory T cell differentiation	8
positive regulation of metabolic process	3
positive regulation of molecular function	2
positive regulation of mononuclear cell proliferation	9
positive regulation of natural killer cell proliferation	8
positive regulation of neuron differentiation	2
positive regulation of nitrogen compound metabolic process	3
positive regulation of nucleobase-containing compound metabolic process	3
positive regulation of nucleotide biosynthetic process	7
positive regulation of nucleotide metabolic process	7
positive regulation of peptidase activity	2
positive regulation of peptide hormone secretion	7
positive regulation of peptide secretion	7
positive regulation of peptidyl-serine phosphorylation	5
positive regulation of peptidyl-tyrosine phosphorylation	5
positive regulation of phosphate metabolic process	5
positive regulation of phosphorus metabolic process	5
positive regulation of phosphorylation	5
positive regulation of programmed cell death	2
positive regulation of protein catabolic process	5
positive regulation of protein complex assembly	9
positive regulation of protein metabolic process	5
positive regulation of protein modification process	5
positive regulation of protein phosphorylation	5
positive regulation of protein polymerization	9
positive regulation of protein serine/threonine kinase activity	2
positive regulation of protein ubiquitination	2
positive regulation of proteolysis	5
positive regulation of purine nucleotide biosynthetic process	7
positive regulation of purine nucleotide metabolic process	7
positive regulation of response to DNA damage stimulus	2
positive regulation of response to stimulus	5
positive regulation of sequence-specific DNA binding transcription factor activity	2
positive regulation of signal transduction	2
positive regulation of signaling	2
positive regulation of stress-activated MAPK cascade	5
positive regulation of stress-activated protein kinase signaling cascade	5
positive regulation of transcription from RNA polymerase II promoter	3
positive regulation of transcription, DNA-dependent	1
positive regulation of transforming growth factor beta receptor signaling pathway	5
positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway	3
positive regulation of tumor necrosis factor production	5
positive regulation of ubiquitin-protein ligase activity	2
positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	2
post-Golgi vesicle-mediated transport	4
post-translational protein modification	8
posttranscriptional regulation of gene expression	2
primary metabolic process	1
programmed cell death	2
prostate gland development	3
prostate gland epithelium morphogenesis	2
prostate gland morphogenesis	2
prostate glandular acinus development	2
proteasomal protein catabolic process	2
proteasomal ubiquitin-dependent protein catabolic process	2
protein K48-linked ubiquitination	2
protein K63-linked ubiquitination	2
protein acetylation	2
protein activation cascade	10
protein acylation	2
protein alkylation	2
protein catabolic process	2
protein complex assembly	5
protein complex biogenesis	5
protein complex disassembly	6
protein complex subunit organization	5
protein localization	9
protein localization in endoplasmic reticulum	1
protein maturation	8
protein metabolic process	5
protein methylation	2
protein modification by small protein conjugation	2
protein modification by small protein conjugation or removal	2
protein modification process	2
protein oligomerization	7
protein phosphorylation	5
protein polymerization	9
protein polyubiquitination	2
protein processing	8
protein targeting to ER	6
protein targeting to membrane	6
protein ubiquitination	2
protein-DNA complex assembly	2
protein-DNA complex disassembly	8
protein-DNA complex subunit organization	2
proteolysis	2
proteolysis involved in cellular protein catabolic process	2
proximal/distal pattern formation	1
purine nucleobase metabolic process	8
purine nucleoside biosynthetic process	8
purine nucleoside metabolic process	8
purine nucleoside triphosphate biosynthetic process	8
purine nucleoside triphosphate catabolic process	6
purine nucleoside triphosphate metabolic process	8
purine nucleotide biosynthetic process	8
purine nucleotide catabolic process	6
purine nucleotide metabolic process	8
purine ribonucleoside biosynthetic process	8
purine ribonucleoside metabolic process	8
purine ribonucleoside triphosphate biosynthetic process	8
purine ribonucleoside triphosphate catabolic process	6
purine ribonucleoside triphosphate metabolic process	8
purine ribonucleotide biosynthetic process	8
purine ribonucleotide catabolic process	6
purine ribonucleotide metabolic process	8
purine-containing compound biosynthetic process	8
purine-containing compound catabolic process	6
purine-containing compound metabolic process	8
pyrimidine nucleoside catabolic process	8
pyrimidine nucleoside metabolic process	8
pyrimidine nucleoside triphosphate metabolic process	8
pyrimidine nucleotide biosynthetic process	7
pyrimidine nucleotide metabolic process	8
pyrimidine ribonucleoside metabolic process	8
pyrimidine ribonucleoside triphosphate metabolic process	8
pyrimidine ribonucleotide metabolic process	8
pyrimidine-containing compound biosynthetic process	8
pyrimidine-containing compound catabolic process	8
pyrimidine-containing compound metabolic process	8
reciprocal DNA recombination	4
reciprocal meiotic recombination	4
recombinational repair	4
regeneration	2
regionalization	10
regulated secretory pathway	5
regulation of B cell proliferation	8
regulation of BMP signaling pathway	3
regulation of CD4-positive, alpha-beta T cell activation	9
regulation of CD4-positive, alpha-beta T cell differentiation	9
regulation of DNA repair	1
regulation of ERBB signaling pathway	2
regulation of ERK1 and ERK2 cascade	5
regulation of G1/S transition of mitotic cell cycle	3
regulation of GTP catabolic process	9
regulation of GTPase activity	9
regulation of I-kappaB kinase/NF-kappaB cascade	2
regulation of MAP kinase activity	5
regulation of RNA biosynthetic process	1
regulation of RNA metabolic process	1
regulation of Ras GTPase activity	9
regulation of Ras protein signal transduction	9
regulation of Rho GTPase activity	9
regulation of Rho protein signal transduction	9
regulation of T cell activation	5
regulation of T cell proliferation	5
regulation of T-helper 1 type immune response	8
regulation of T-helper 17 cell differentiation	8
regulation of T-helper 17 type immune response	8
regulation of Wnt receptor signaling pathway	2
regulation of actin cytoskeleton organization	9
regulation of actin filament bundle assembly	6
regulation of actin filament length	9
regulation of actin filament polymerization	9
regulation of actin filament-based process	9
regulation of actin polymerization or depolymerization	9
regulation of action potential	9
regulation of action potential in neuron	6
regulation of adaptive immune response	8
regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains	8
regulation of adenylate cyclase activity	7
regulation of anatomical structure morphogenesis	2
regulation of anatomical structure size	9
regulation of apoptotic process	2
regulation of axonogenesis	6
regulation of binding	2
regulation of biological process	1
regulation of biological quality	9
regulation of biosynthetic process	1
regulation of body fluid levels	1
regulation of cAMP biosynthetic process	7
regulation of cAMP metabolic process	7
regulation of calcium ion transport	9
regulation of canonical Wnt receptor signaling pathway	2
regulation of carbohydrate metabolic process	8
regulation of cartilage development	2
regulation of catabolic process	9
regulation of catalytic activity	5
regulation of cell activation	5
regulation of cell adhesion	5
regulation of cell communication	2
regulation of cell cycle	2
regulation of cell cycle arrest	2
regulation of cell cycle process	2
regulation of cell death	2
regulation of cell development	2
regulation of cell differentiation	2
regulation of cell growth	3
regulation of cell killing	5
regulation of cell migration	6
regulation of cell morphogenesis	6
regulation of cell motility	6
regulation of cell proliferation	3
regulation of cell-substrate adhesion	6
regulation of cellular amine metabolic process	1
regulation of cellular biosynthetic process	1
regulation of cellular carbohydrate metabolic process	7
regulation of cellular catabolic process	9
regulation of cellular component biogenesis	9
regulation of cellular component movement	6
regulation of cellular component organization	5
regulation of cellular component size	9
regulation of cellular macromolecule biosynthetic process	1
regulation of cellular metabolic process	1
regulation of cellular process	1
regulation of cellular protein metabolic process	2
regulation of cellular response to insulin stimulus	2
regulation of cellular response to stress	2
regulation of chemokine biosynthetic process	5
regulation of chemokine production	5
regulation of cholesterol transport	2
regulation of cyclase activity	7
regulation of cyclic nucleotide biosynthetic process	7
regulation of cyclic nucleotide metabolic process	7
regulation of cytokine biosynthetic process	5
regulation of cytokine production	5
regulation of cytokine-mediated signaling pathway	5
regulation of cytoskeleton organization	6
regulation of defense response	5
regulation of defense response to virus by host	8
regulation of defense response to virus by virus	4
regulation of developmental process	2
regulation of embryonic development	10
regulation of endocytosis	5
regulation of epidermal growth factor receptor signaling pathway	2
regulation of epidermis development	2
regulation of fat cell differentiation	2
regulation of fibroblast proliferation	2
regulation of gene expression	1
regulation of gene expression, epigenetic	1
regulation of glucan biosynthetic process	8
regulation of gluconeogenesis	8
regulation of glucose import	8
regulation of glucose metabolic process	8
regulation of glucose transport	8
regulation of glycogen biosynthetic process	8
regulation of glycogen metabolic process	8
regulation of growth of symbiont in host	5
regulation of heart contraction	5
regulation of immune effector process	5
regulation of immune response	5
regulation of immune system process	5
regulation of inflammatory response	5
regulation of innate immune response	5
regulation of insulin receptor signaling pathway	2
regulation of interferon-gamma production	8
regulation of interleukin-12 production	8
regulation of interleukin-2 biosynthetic process	5
regulation of interleukin-2 production	5
regulation of interleukin-6 production	5
regulation of interleukin-8 production	5
regulation of interphase of mitotic cell cycle	2
regulation of intracellular protein transport	2
regulation of intracellular transport	5
regulation of ion homeostasis	9
regulation of ion transmembrane transport	9
regulation of ion transmembrane transporter activity	9
regulation of ion transport	9
regulation of kinase activity	5
regulation of leukocyte activation	5
regulation of leukocyte chemotaxis	5
regulation of leukocyte mediated immunity	5
regulation of leukocyte migration	5
regulation of leukocyte proliferation	5
regulation of ligase activity	2
regulation of lipid biosynthetic process	2
regulation of localization	5
regulation of locomotion	6
regulation of lyase activity	7
regulation of lymphocyte activation	5
regulation of lymphocyte mediated immunity	5
regulation of lymphocyte proliferation	5
regulation of macromolecule biosynthetic process	1
regulation of macromolecule metabolic process	1
regulation of membrane potential	9
regulation of membrane protein ectodomain proteolysis	5
regulation of memory T cell differentiation	8
regulation of metabolic process	1
regulation of metal ion transport	9
regulation of mitotic cell cycle	2
regulation of molecular function	2
regulation of mononuclear cell proliferation	5
regulation of morphogenesis of a branching structure	1
regulation of multi-organism process	5
regulation of multicellular organismal development	2
regulation of multicellular organismal process	2
regulation of muscle cell differentiation	3
regulation of muscle system process	9
regulation of myeloid cell differentiation	1
regulation of natural killer cell proliferation	8
regulation of nervous system development	2
regulation of neurogenesis	2
regulation of neuron differentiation	2
regulation of nitric oxide biosynthetic process	5
regulation of nitrogen compound metabolic process	1
regulation of nucleobase-containing compound metabolic process	1
regulation of nucleocytoplasmic transport	2
regulation of nucleotide biosynthetic process	7
regulation of nucleotide catabolic process	9
regulation of nucleotide metabolic process	7
regulation of organ morphogenesis	2
regulation of organelle organization	6
regulation of ossification	2
regulation of osteoblast differentiation	6
regulation of peptidyl-serine phosphorylation	5
regulation of phosphate metabolic process	5
regulation of phosphorus metabolic process	5
regulation of phosphorylation	5
regulation of primary metabolic process	1
regulation of programmed cell death	2
regulation of protein complex assembly	9
regulation of protein import into nucleus	2
regulation of protein import into nucleus, translocation	2
regulation of protein kinase activity	5
regulation of protein localization to nucleus	2
regulation of protein metabolic process	5
regulation of protein modification process	5
regulation of protein phosphorylation	5
regulation of protein polymerization	9
regulation of protein serine/threonine kinase activity	5
regulation of protein ubiquitination	2
regulation of proteolysis	5
regulation of purine nucleotide biosynthetic process	7
regulation of purine nucleotide catabolic process	9
regulation of purine nucleotide metabolic process	7
regulation of reproductive process	2
regulation of response to DNA damage stimulus	2
regulation of response to cytokine stimulus	5
regulation of response to stimulus	5
regulation of response to stress	5
regulation of retinoic acid receptor signaling pathway	2
regulation of sequence-specific DNA binding transcription factor activity	2
regulation of signal transduction	2
regulation of signaling	2
regulation of small GTPase mediated signal transduction	9
regulation of smooth muscle cell differentiation	3
regulation of smoothened signaling pathway	2
regulation of steroid biosynthetic process	2
regulation of steroid metabolic process	2
regulation of sterol transport	2
regulation of stress fiber assembly	6
regulation of stress-activated MAPK cascade	5
regulation of stress-activated protein kinase signaling cascade	5
regulation of striated muscle contraction	9
regulation of symbiosis, encompassing mutualism through parasitism	5
regulation of synapse assembly	6
regulation of synapse organization	6
regulation of synapse structure and activity	6
regulation of system process	9
regulation of transcription from RNA polymerase II promoter	1
regulation of transcription involved in G1/S phase of mitotic cell cycle	1
regulation of transcription involved in cell fate commitment	8
regulation of transcription regulatory region DNA binding	2
regulation of transcription, DNA-dependent	1
regulation of transferase activity	5
regulation of transforming growth factor beta receptor signaling pathway	2
regulation of transmembrane receptor protein serine/threonine kinase signaling pathway	3
regulation of transmembrane transporter activity	9
regulation of transport	5
regulation of transporter activity	9
regulation of transposition	8
regulation of tumor necrosis factor biosynthetic process	5
regulation of tumor necrosis factor production	5
regulation of type 2 immune response	5
regulation of type I interferon production	2
regulation of type I interferon-mediated signaling pathway	5
regulation of ubiquitin-protein ligase activity	2
regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	2
regulation of vesicle-mediated transport	5
renal system development	10
reproduction	3
reproductive process	3
reproductive structure development	2
respiratory system development	1
respiratory tube development	1
response to DNA damage stimulus	4
response to UV	7
response to abiotic stimulus	2
response to alcohol	5
response to bacterium	5
response to biotic stimulus	5
response to chemical stimulus	5
response to corticosteroid stimulus	2
response to cytokine stimulus	5
response to decreased oxygen levels	5
response to drug	2
response to endogenous stimulus	2
response to epidermal growth factor stimulus	2
response to estradiol stimulus	2
response to estrogen stimulus	2
response to ethanol	5
response to external stimulus	2
response to extracellular stimulus	2
response to fibroblast growth factor stimulus	4
response to glucocorticoid stimulus	2
response to growth factor stimulus	2
response to hormone stimulus	2
response to hypoxia	5
response to inorganic substance	9
response to insulin stimulus	9
response to interferon-gamma	5
response to ionizing radiation	2
response to lipopolysaccharide	5
response to lithium ion	2
response to metal ion	2
response to molecule of bacterial origin	5
response to nutrient	2
response to nutrient levels	2
response to organic cyclic compound	2
response to organic substance	5
response to other organism	5
response to oxygen levels	5
response to progesterone stimulus	2
response to radiation	2
response to retinoic acid	2
response to steroid hormone stimulus	2
response to stimulus	5
response to stress	5
response to type I interferon	5
response to virus	5
response to vitamin	2
response to vitamin A	2
response to wounding	5
retina morphogenesis in camera-type eye	10
rhombomere development	2
rhythmic process	1
ribonucleoprotein complex biogenesis	7
ribonucleoside biosynthetic process	8
ribonucleoside metabolic process	8
ribonucleoside triphosphate biosynthetic process	8
ribonucleoside triphosphate catabolic process	6
ribonucleoside triphosphate metabolic process	8
ribonucleotide biosynthetic process	8
ribonucleotide catabolic process	6
ribonucleotide metabolic process	8
ribosome biogenesis	4
secretion	5
sensory organ development	1
sex differentiation	2
signal transduction	5
signal transduction by p53 class mediator	2
signal transduction by p53 class mediator resulting in induction of apoptosis	2
signal transduction in response to DNA damage	2
signal transduction involved in DNA damage checkpoint	2
signal transduction involved in DNA integrity checkpoint	2
signal transduction involved in G1/S transition checkpoint	2
signal transduction involved in cell cycle checkpoint	2
signal transduction involved in mitotic cell cycle G1/S checkpoint	2
signal transduction involved in mitotic cell cycle G1/S transition DNA damage checkpoint	2
signal transduction involved in mitotic cell cycle checkpoint	2
signal transduction involved in regulation of gene expression	2
signaling	5
skeletal system development	3
skeletal system morphogenesis	3
skin development	1
small GTPase mediated signal transduction	9
small molecule biosynthetic process	10
small molecule metabolic process	8
spinal cord development	10
spinal cord dorsal/ventral patterning	2
spinal cord motor neuron cell fate specification	2
spinal cord motor neuron differentiation	10
spinal cord patterning	2
sprouting angiogenesis	1
stem cell development	2
stem cell differentiation	2
stem cell maintenance	2
sterol metabolic process	8
striated muscle contraction	5
symbiosis, encompassing mutualism through parasitism	1
sympathetic nervous system development	3
synaptic transmission	9
system development	6
tRNA metabolic process	6
tRNA processing	6
taxis	6
telencephalon development	10
telomere maintenance	7
telomere maintenance via recombination	7
telomere maintenance via semi-conservative replication	7
telomere maintenance via telomere lengthening	7
telomere organization	7
tissue development	3
tissue morphogenesis	3
toll-like receptor 1 signaling pathway	2
toll-like receptor 2 signaling pathway	2
toll-like receptor 3 signaling pathway	2
toll-like receptor 4 signaling pathway	2
toll-like receptor signaling pathway	2
transcription from RNA polymerase II promoter	3
transcription initiation from RNA polymerase II promoter	3
transcription, DNA-dependent	1
transcription-coupled nucleotide-excision repair	7
transforming growth factor beta receptor signaling pathway	2
translational elongation	6
translational initiation	6
translational termination	6
transmembrane receptor protein serine/threonine kinase signaling pathway	2
transmembrane receptor protein tyrosine kinase signaling pathway	4
transmission of nerve impulse	9
transport	9
trophectodermal cell differentiation	1
tube development	3
tube morphogenesis	3
type I interferon-mediated signaling pathway	5
ubiquitin-dependent protein catabolic process	2
ureteric bud development	3
ureteric bud morphogenesis	3
urogenital system development	10
vasculature development	1
ventral spinal cord development	10
ventral spinal cord interneuron differentiation	2
vesicle coating	5
vesicle organization	9
vesicle-mediated transport	5
viral genome expression	1
viral infectious cycle	3
viral reproduction	3
viral reproductive process	3
viral transcription	1
virus-host interaction	1
white fat cell differentiation	2
wound healing	9