ATP catabolic process	7
ATP hydrolysis coupled proton transport	5
ATP metabolic process	7
B cell mediated immunity	7
BMP signaling pathway	3
DNA alkylation	9
DNA damage checkpoint	1
DNA damage response, signal transduction by p53 class mediator	1
DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest	1
DNA integrity checkpoint	1
DNA metabolic process	9
DNA methylation	9
DNA modification	9
DNA repair	8
DNA replication	9
DNA-dependent transcription, initiation	3
G1/S transition checkpoint	1
G1/S transition of mitotic cell cycle	1
G2/M transition of mitotic cell cycle	9
M phase	10
M phase of meiotic cell cycle	9
M phase of mitotic cell cycle	9
M/G1 transition of mitotic cell cycle	1
RNA biosynthetic process	3
RNA catabolic process	9
RNA export from nucleus	2
RNA localization	2
RNA metabolic process	3
RNA modification	9
RNA processing	5
RNA splicing	2
RNA splicing, via transesterification reactions	5
RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	5
RNA transport	2
S phase	1
S phase of mitotic cell cycle	1
T cell activation	3
T cell costimulation	4
T cell differentiation	4
T cell differentiation in thymus	4
T cell proliferation	3
T cell receptor signaling pathway	4
T cell selection	4
activation of immune response	10
acylglycerol metabolic process	9
adaptive immune response	7
adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains	7
aging	3
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	1
anatomical structure development	8
anion transport	5
anterior/posterior pattern specification	3
antigen processing and presentation	4
antigen processing and presentation of exogenous antigen	1
antigen processing and presentation of exogenous peptide antigen	1
antigen processing and presentation of exogenous peptide antigen via MHC class I	1
antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent	1
antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent	4
antigen processing and presentation of exogenous peptide antigen via MHC class II	4
antigen processing and presentation of peptide antigen	1
antigen processing and presentation of peptide antigen via MHC class I	1
antigen processing and presentation of peptide antigen via MHC class II	4
antigen processing and presentation of peptide or polysaccharide antigen via MHC class II	4
antigen receptor-mediated signaling pathway	4
apoptotic process	3
biological regulation	3
blood vessel development	3
blood vessel morphogenesis	3
branching involved in mammary gland duct morphogenesis	8
carbohydrate derivative catabolic process	6
carbohydrate metabolic process	2
carbohydrate transport	2
cardiovascular system development	3
catabolic process	1
cation homeostasis	5
cation transport	5
cell activation	3
cell aging	3
cell communication	3
cell cycle	9
cell cycle checkpoint	1
cell cycle phase	9
cell cycle process	9
cell death	1
cell differentiation	8
cell killing	10
cell migration	3
cell motility	3
cell proliferation	3
cell surface receptor signaling pathway	4
cellular catabolic process	1
cellular cation homeostasis	5
cellular chemical homeostasis	6
cellular component assembly at cellular level	10
cellular component disassembly	8
cellular component disassembly at cellular level	8
cellular component organization	9
cellular component organization at cellular level	9
cellular component organization or biogenesis	9
cellular component organization or biogenesis at cellular level	9
cellular developmental process	8
cellular homeostasis	5
cellular ion homeostasis	5
cellular iron ion homeostasis	5
cellular lipid metabolic process	9
cellular localization	2
cellular macromolecule biosynthetic process	3
cellular macromolecule catabolic process	1
cellular macromolecule localization	1
cellular macromolecule metabolic process	8
cellular metabolic process	8
cellular metal ion homeostasis	5
cellular nitrogen compound catabolic process	6
cellular nitrogen compound metabolic process	3
cellular process involved in reproduction	8
cellular protein catabolic process	1
cellular protein localization	1
cellular protein metabolic process	1
cellular protein modification process	1
cellular response to abiotic stimulus	3
cellular response to chemical stimulus	4
cellular response to cytokine stimulus	4
cellular response to decreased oxygen levels	3
cellular response to external stimulus	3
cellular response to extracellular stimulus	3
cellular response to hormone stimulus	6
cellular response to hypoxia	3
cellular response to insulin stimulus	5
cellular response to interferon-gamma	4
cellular response to nutrient levels	3
cellular response to organic substance	4
cellular response to oxygen levels	3
cellular response to peptide hormone stimulus	5
cellular response to radiation	8
cellular response to steroid hormone stimulus	3
cellular response to stimulus	3
cellular response to stress	3
cellular response to tumor necrosis factor	3
cellular response to type I interferon	4
centriole replication	9
centrosome cycle	9
centrosome duplication	9
centrosome organization	9
chemical homeostasis	6
chordate embryonic development	3
chromosome organization	8
chromosome organization involved in meiosis	9
cilium assembly	9
cilium morphogenesis	9
circulatory system development	3
complement activation	7
complement activation, classical pathway	7
cytokine-mediated signaling pathway	4
cytoskeleton organization	9
death	3
defense response	4
defense response to bacterium	10
defense response to virus	3
developmental process	3
diacylglycerol metabolic process	9
embryo development ending in birth or egg hatching	3
embryonic digit morphogenesis	3
embryonic forelimb morphogenesis	3
endocytosis	7
energy coupled proton transport, against electrochemical gradient	5
enzyme linked receptor protein signaling pathway	5
epithelial cell maturation	3
establishment of RNA localization	2
establishment of localization	5
establishment of localization in cell	2
establishment of protein localization	7
establishment of protein localization to organelle	9
ferric iron transport	5
forelimb morphogenesis	3
gene expression	3
gland development	3
gland morphogenesis	8
glucose transport	2
glycerolipid metabolic process	9
heart development	3
heart morphogenesis	3
hemopoiesis	3
hemopoietic or lymphoid organ development	3
heterocycle catabolic process	6
heterocycle metabolic process	9
hexose transport	2
hindlimb morphogenesis	3
humoral immune response	7
humoral immune response mediated by circulating immunoglobulin	7
hydrogen transport	5
immune effector process	7
immune response	4
immune response-activating cell surface receptor signaling pathway	4
immune response-activating signal transduction	4
immune response-regulating cell surface receptor signaling pathway	4
immune response-regulating signaling pathway	4
immune system development	3
immune system process	4
immunoglobulin mediated immune response	7
in utero embryonic development	3
induction of apoptosis	3
induction of apoptosis by extracellular signals	8
induction of programmed cell death	3
innate immune response	4
insulin receptor signaling pathway	5
interaction with host	2
interferon-gamma-mediated signaling pathway	4
interphase	10
interphase of mitotic cell cycle	10
interspecies interaction between organisms	3
intracellular protein kinase cascade	3
intracellular protein transport	9
intracellular receptor mediated signaling pathway	3
intracellular signal transduction	3
intracellular transport	2
intronless viral mRNA export from host nucleus	2
ion homeostasis	5
ion transmembrane transport	5
ion transport	5
iron ion homeostasis	5
iron ion transport	5
leukocyte activation	3
leukocyte differentiation	3
leukocyte mediated cytotoxicity	10
leukocyte mediated immunity	7
leukocyte proliferation	3
lipid metabolic process	9
localization	5
localization of cell	3
lymph node development	3
lymphocyte activation	3
lymphocyte costimulation	4
lymphocyte differentiation	8
lymphocyte mediated immunity	7
lymphocyte proliferation	3
mRNA catabolic process	9
mRNA export from nucleus	2
mRNA metabolic process	1
mRNA processing	2
mRNA transport	2
macromolecule biosynthetic process	3
macromolecule catabolic process	1
macromolecule localization	2
macromolecule metabolic process	8
macromolecule methylation	9
macromolecule modification	1
male gonad development	8
mammary gland development	3
mammary gland duct morphogenesis	8
mammary gland morphogenesis	8
meiosis	9
meiosis I	6
metal ion homeostasis	5
metal ion transport	5
methylation	9
microtubule cytoskeleton organization	9
microtubule organizing center organization	9
microtubule-based process	9
mitosis	9
mitotic cell cycle	9
mitotic cell cycle G1/S transition DNA damage checkpoint	1
mitotic cell cycle G1/S transition checkpoint	1
mitotic cell cycle checkpoint	1
modification-dependent macromolecule catabolic process	1
modification-dependent protein catabolic process	1
mononuclear cell proliferation	3
monosaccharide transport	2
monovalent inorganic cation homeostasis	6
monovalent inorganic cation transport	5
multi-organism process	3
multicellular organism growth	3
multicellular organismal development	3
multicellular organismal process	8
myeloid cell differentiation	3
myeloid leukocyte differentiation	3
ncRNA metabolic process	9
negative regulation of DNA binding	3
negative regulation of T cell activation	4
negative regulation of binding	3
negative regulation of biological process	3
negative regulation of catalytic activity	3
negative regulation of cell proliferation	3
negative regulation of cellular metabolic process	3
negative regulation of cellular protein metabolic process	1
negative regulation of ligase activity	1
negative regulation of lymphocyte activation	4
negative regulation of macromolecule metabolic process	3
negative regulation of metabolic process	3
negative regulation of molecular function	3
negative regulation of protein binding	3
negative regulation of protein metabolic process	1
negative regulation of protein modification process	3
negative regulation of protein ubiquitination	1
negative regulation of reproductive process	3
negative regulation of transposition	9
negative regulation of ubiquitin-protein ligase activity	1
negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	1
negative regulation of viral genome replication	4
negative regulation of viral reproduction	4
neuron migration	3
neutral lipid metabolic process	9
nitrogen compound metabolic process	3
nuclear division	9
nuclear export	2
nuclear mRNA splicing, via spliceosome	5
nuclear transport	2
nuclear-transcribed mRNA catabolic process	9
nucleic acid metabolic process	3
nucleic acid transport	2
nucleobase-containing compound catabolic process	6
nucleobase-containing compound metabolic process	3
nucleobase-containing compound transport	2
nucleocytoplasmic transport	2
nucleoside catabolic process	9
nucleoside metabolic process	9
nucleoside triphosphate catabolic process	6
nucleotide catabolic process	6
organ development	3
organelle organization	9
organic substance metabolic process	6
organic substance transport	2
ossification	3
osteoclast differentiation	3
peptidyl-amino acid modification	10
placenta development	3
positive T cell selection	4
positive regulation of B cell proliferation	3
positive regulation of I-kappaB kinase/NF-kappaB cascade	3
positive regulation of NF-kappaB transcription factor activity	3
positive regulation of RNA metabolic process	3
positive regulation of T cell activation	4
positive regulation of T cell differentiation	10
positive regulation of acute inflammatory response	6
positive regulation of adaptive immune response	3
positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains	3
positive regulation of apoptotic process	3
positive regulation of apoptotic signaling pathway	3
positive regulation of biological process	3
positive regulation of biosynthetic process	3
positive regulation of catalytic activity	3
positive regulation of cell activation	4
positive regulation of cell communication	3
positive regulation of cell cycle arrest	1
positive regulation of cell cycle process	1
positive regulation of cell death	3
positive regulation of cell development	3
positive regulation of cell differentiation	3
positive regulation of cell killing	10
positive regulation of cellular biosynthetic process	3
positive regulation of cellular metabolic process	3
positive regulation of cellular process	3
positive regulation of cellular protein metabolic process	1
positive regulation of cysteine-type endopeptidase activity	8
positive regulation of cysteine-type endopeptidase activity involved in apoptotic process	8
positive regulation of cytokine biosynthetic process	8
positive regulation of developmental process	3
positive regulation of endopeptidase activity	8
positive regulation of gene expression	3
positive regulation of immune response	10
positive regulation of immune system process	4
positive regulation of intracellular protein transport	8
positive regulation of intracellular transport	8
positive regulation of kinase activity	3
positive regulation of leukocyte activation	4
positive regulation of leukocyte mediated cytotoxicity	10
positive regulation of leukocyte mediated immunity	10
positive regulation of ligase activity	1
positive regulation of lymphocyte activation	4
positive regulation of lymphocyte mediated immunity	10
positive regulation of macromolecule biosynthetic process	3
positive regulation of macromolecule metabolic process	3
positive regulation of metabolic process	3
positive regulation of molecular function	3
positive regulation of multicellular organismal process	3
positive regulation of myeloid leukocyte differentiation	3
positive regulation of nitric oxide biosynthetic process	8
positive regulation of nitrogen compound metabolic process	8
positive regulation of nucleobase-containing compound metabolic process	3
positive regulation of peptidase activity	8
positive regulation of programmed cell death	3
positive regulation of protein catabolic process	1
positive regulation of protein import into nucleus	8
positive regulation of protein kinase activity	3
positive regulation of protein metabolic process	3
positive regulation of protein modification process	1
positive regulation of protein serine/threonine kinase activity	3
positive regulation of protein ubiquitination	1
positive regulation of response to stimulus	10
positive regulation of sequence-specific DNA binding transcription factor activity	3
positive regulation of signal transduction	3
positive regulation of signaling	3
positive regulation of transcription from RNA polymerase II promoter	3
positive regulation of transcription, DNA-dependent	3
positive regulation of transferase activity	3
positive regulation of ubiquitin-protein ligase activity	1
positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	1
positive thymic T cell selection	4
programmed cell death	3
prophase	9
proteasomal protein catabolic process	1
proteasomal ubiquitin-dependent protein catabolic process	1
protein activation cascade	7
protein autoubiquitination	7
protein catabolic process	1
protein folding	7
protein localization	5
protein metabolic process	1
protein modification by small protein conjugation	1
protein modification by small protein conjugation or removal	1
protein modification process	1
protein polyubiquitination	1
protein targeting to membrane	9
protein transport	7
protein ubiquitination	1
proteolysis	1
proteolysis involved in cellular protein catabolic process	1
proton transport	5
purine nucleoside triphosphate catabolic process	6
purine nucleotide catabolic process	6
purine ribonucleoside triphosphate catabolic process	6
purine ribonucleotide catabolic process	6
purine-containing compound catabolic process	6
pyrimidine nucleoside metabolic process	9
pyrimidine ribonucleoside metabolic process	9
pyrimidine-containing compound metabolic process	9
reciprocal DNA recombination	6
reciprocal meiotic recombination	6
regulation of B cell mediated immunity	10
regulation of G1/S transition of mitotic cell cycle	1
regulation of I-kappaB kinase/NF-kappaB cascade	3
regulation of JNK cascade	3
regulation of RNA biosynthetic process	3
regulation of RNA metabolic process	3
regulation of T cell activation	4
regulation of acute inflammatory response	6
regulation of adaptive immune response	10
regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains	10
regulation of apoptotic process	3
regulation of apoptotic signaling pathway	3
regulation of binding	3
regulation of biological process	3
regulation of biosynthetic process	3
regulation of calcium-mediated signaling	4
regulation of catalytic activity	3
regulation of cell activation	4
regulation of cell communication	3
regulation of cell cycle	3
regulation of cell cycle arrest	1
regulation of cell cycle process	1
regulation of cell death	3
regulation of cell growth	3
regulation of cell killing	10
regulation of cell morphogenesis	3
regulation of cell proliferation	3
regulation of cellular amine metabolic process	1
regulation of cellular amino acid metabolic process	1
regulation of cellular biosynthetic process	3
regulation of cellular ketone metabolic process	3
regulation of cellular macromolecule biosynthetic process	3
regulation of cellular metabolic process	3
regulation of cellular process	3
regulation of cellular protein metabolic process	1
regulation of cellular response to stress	3
regulation of complement activation	7
regulation of cysteine-type endopeptidase activity	3
regulation of cytokine biosynthetic process	8
regulation of defense response	10
regulation of developmental process	3
regulation of endopeptidase activity	3
regulation of epithelial cell differentiation	3
regulation of gene expression	3
regulation of gene expression, epigenetic	9
regulation of glucose transport	2
regulation of humoral immune response	7
regulation of hydrolase activity	3
regulation of immune effector process	7
regulation of immune response	4
regulation of immune system process	4
regulation of immunoglobulin mediated immune response	10
regulation of inflammatory response	6
regulation of innate immune response	3
regulation of interphase of mitotic cell cycle	1
regulation of intracellular protein transport	8
regulation of intracellular transport	8
regulation of leukocyte activation	4
regulation of leukocyte mediated cytotoxicity	10
regulation of leukocyte mediated immunity	10
regulation of ligase activity	1
regulation of lymphocyte activation	4
regulation of lymphocyte mediated immunity	10
regulation of macromolecule biosynthetic process	3
regulation of macromolecule metabolic process	3
regulation of metabolic process	3
regulation of mitotic cell cycle	1
regulation of molecular function	3
regulation of multicellular organismal process	3
regulation of nitric oxide biosynthetic process	8
regulation of nitrogen compound metabolic process	3
regulation of nucleobase-containing compound metabolic process	3
regulation of nucleocytoplasmic transport	8
regulation of pH	6
regulation of peptidase activity	3
regulation of primary metabolic process	3
regulation of programmed cell death	3
regulation of proteasomal protein catabolic process	1
regulation of protein activation cascade	7
regulation of protein binding	3
regulation of protein catabolic process	1
regulation of protein import into nucleus	8
regulation of protein localization to nucleus	8
regulation of protein metabolic process	3
regulation of protein modification process	3
regulation of protein processing	7
regulation of protein ubiquitination	1
regulation of proteolysis	1
regulation of reproductive process	3
regulation of response to external stimulus	6
regulation of response to stimulus	3
regulation of response to stress	3
regulation of sequence-specific DNA binding transcription factor activity	3
regulation of signal transduction	3
regulation of signaling	3
regulation of stress-activated MAPK cascade	3
regulation of stress-activated protein kinase signaling cascade	3
regulation of toll-like receptor signaling pathway	3
regulation of transcription from RNA polymerase II promoter	3
regulation of transcription, DNA-dependent	3
regulation of transmembrane transport	8
regulation of transporter activity	3
regulation of transposition	9
regulation of ubiquitin-protein ligase activity	1
regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	1
regulation of viral genome replication	4
regulation of viral reproduction	3
response to DNA damage stimulus	1
response to abiotic stimulus	8
response to amine stimulus	8
response to biotic stimulus	3
response to cAMP	3
response to calcium ion	3
response to chemical stimulus	7
response to cytokine stimulus	4
response to drug	3
response to estrogen stimulus	8
response to extracellular stimulus	3
response to heat	8
response to hormone stimulus	6
response to inorganic substance	3
response to insulin stimulus	6
response to interferon-gamma	4
response to interleukin-1	3
response to lithium ion	3
response to metal ion	3
response to nutrient levels	3
response to organic cyclic compound	3
response to organic substance	7
response to other organism	3
response to peptide hormone stimulus	6
response to progesterone stimulus	2
response to radiation	3
response to steroid hormone stimulus	8
response to stimulus	7
response to stress	4
response to temperature stimulus	8
response to topologically incorrect protein	7
response to tumor necrosis factor	3
response to type I interferon	4
response to unfolded protein	7
response to virus	4
ribonucleoside catabolic process	9
ribonucleoside metabolic process	9
ribonucleoside triphosphate catabolic process	6
ribonucleotide catabolic process	6
signal transduction	3
signal transduction by p53 class mediator	1
signal transduction in response to DNA damage	1
signal transduction involved in DNA damage checkpoint	1
signal transduction involved in DNA integrity checkpoint	1
signal transduction involved in G1/S transition checkpoint	1
signal transduction involved in cell cycle checkpoint	1
signal transduction involved in mitotic cell cycle G1/S checkpoint	1
signal transduction involved in mitotic cell cycle G1/S transition DNA damage checkpoint	1
signal transduction involved in mitotic cell cycle checkpoint	1
signal transduction involved in regulation of gene expression	3
signaling	3
stress-activated MAPK cascade	3
stress-activated protein kinase signaling cascade	3
system development	3
thymic T cell selection	4
transcription from RNA polymerase II promoter	3
transcription initiation from RNA polymerase II promoter	3
transcription, DNA-dependent	3
transferrin transport	5
transition metal ion transport	5
translational elongation	9
translational initiation	9
transmembrane receptor protein serine/threonine kinase signaling pathway	3
transmembrane receptor protein tyrosine kinase signaling pathway	5
transmembrane transport	7
transport	5
tumor necrosis factor-mediated signaling pathway	3
type I interferon-mediated signaling pathway	4
ubiquitin-dependent protein catabolic process	1
vasculature development	3
vesicle-mediated transport	7
viral infectious cycle	8
viral reproduction	2
viral reproductive process	2
virus-host interaction	2