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Datasets used with Arborteum

Arboretum was used with several cross-species datasets. We here provide the expression matrices and the initial clusterings used to inialize Arboretum for clustering Each tar file below has species-specific files. Files with the suffix "clusterassign.txt" have the cluster assignments used for initializing Arboretum. Files with suffix ".geneexp" have the expression data.

Carbon 8 species
carbon8.tgz Species clusters and expression data for 8 Ascomycete yeast species under glucose depletion
Heat 8 species
heat8.tgz Species clusters and expression data for 8 Ascomycete yeast species under heat shock
Salt 5 species
salt5.tgz Species clusters and expression data for 5 Ascomycete yeast species under salt stress
Oxidative 5 species
ox5.tgz Species clusters and expression data for 5 Ascomycete yeast species under oxidative stress
 
Additional data
Orthogroup mapping file for all 14 species
example_inputs.tgz Tar file containing input configuration files for all applications in the manuscript.
 
 
 
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